PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_008235018.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family NF-YB
Protein Properties Length: 176aa    MW: 19827 Da    PI: 6.8817
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_008235018.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB177.61.1e-5538133297
           NF-YB   2 reqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyrelege 96 
                     +eqdr+lPianv+rimk++lP nakisk+aket+qecvsefisfvt+easdkc++ekrkt+ngdd++walatlGf+dy+eplk yl++yrelege
  XP_008235018.1  38 KEQDRLLPIANVGRIMKQILPPNAKISKEAKETMQECVSEFISFVTGEASDKCHKEKRKTVNGDDICWALATLGFDDYAEPLKRYLHRYRELEGE 132
                     89********************************************************************************************9 PP

           NF-YB  97 k 97 
                     k
  XP_008235018.1 133 K 133
                     7 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.101.0E-5431148IPR009072Histone-fold
SuperFamilySSF471137.14E-4140145IPR009072Histone-fold
PfamPF008087.4E-2843107IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
PRINTSPR006151.2E-197189No hitNo description
PROSITE patternPS0068507490IPR003956Transcription factor, NFYB/HAP3, conserved site
PRINTSPR006151.2E-1990108No hitNo description
PRINTSPR006151.2E-19109127No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 176 aa     Download sequence    Send to blast
MDNNIGNNSS EGEGFKYNFT GSSISSDHHH HQEDGVIKEQ DRLLPIANVG RIMKQILPPN  60
AKISKEAKET MQECVSEFIS FVTGEASDKC HKEKRKTVNG DDICWALATL GFDDYAEPLK  120
RYLHRYRELE GEKAAHQGKA NSSEERNEVS PPRTSTSSPL KFNVLERGNS SLSRRF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4g91_B3e-4537128192Transcription factor HapC (Eurofung)
4g92_B3e-4537128192Transcription factor HapC (Eurofung)
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008235018.11e-131PREDICTED: nuclear transcription factor Y subunit B-5
SwissprotO822487e-67NFYB5_ARATH; Nuclear transcription factor Y subunit B-5
TrEMBLM5VPK91e-128M5VPK9_PRUPE; Uncharacterized protein
STRINGVIT_07s0104g01640.t012e-86(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF80532131
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47810.13e-68nuclear factor Y, subunit B5